Detailed information of SNP:
|
SNP ID:
sf0709537366(Gbrowse)
Chromosome: chr07 Position: 9537366 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 94.49% | 5.51% |
| All Indica | 787 | 99.24% | 0.76% |
| All Japonica | 491 | 86.97% | 13.03% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 371 | 98.92% | 1.08% |
| Indica II | 206 | 99.03% | 0.97% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 86.23% | 13.77% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 64 | 73.44% | 26.56% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709537366 | C->T | INTERGENIC | None |