Detailed information of SNP:
|
SNP ID:
sf0709565004(Gbrowse)
Chromosome: chr07 Position: 9565004 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 93.02% | 6.98% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 497 | 84.10% | 15.90% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 66.18% | 33.82% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709565004 | C->T | LOC_Os07g16364(LOC_Os07g16364.1) | UTR_3_PRIME |