Detailed information of SNP:
|
SNP ID:
sf0709587270(Gbrowse)
Chromosome: chr07 Position: 9587270 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1346 | 67.01% | 32.99% |
| All Indica | 731 | 42.95% | 57.05% |
| All Japonica | 496 | 98.99% | 1.01% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 335 | 58.51% | 41.49% |
| Indica II | 198 | 15.15% | 84.85% |
| Indica Intermediate | 198 | 44.44% | 55.56% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709587270 | C->T | INTERGENIC | None |