Detailed information of SNP:
|
SNP ID:
sf0709589705(Gbrowse)
Chromosome: chr07 Position: 9589705 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 66.17% | 33.83% |
| All Indica | 796 | 93.22% | 6.78% |
| All Japonica | 496 | 29.84% | 70.16% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 373 | 97.86% | 2.14% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 81.43% | 18.57% |
| Temperate Japonica | 335 | 35.52% | 64.48% |
| Tropical Japonica | 94 | 10.64% | 89.36% |
| Japonica Intermediate | 67 | 28.36% | 71.64% |
| Group VI/Aromatic | 14 | 21.43% | 78.57% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709589705 | G->A | LOC_Os07g16400(LOC_Os07g16400.1) | INTRON |