Detailed information of SNP:
|
SNP ID:
sf0709621929(Gbrowse)
Chromosome: chr07 Position: 9621929 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1387 | 97.84% | 2.16% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 469 | 94.88% | 5.12% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 315 | 94.60% | 5.40% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 61 | 91.80% | 8.20% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709621929 | G->A | INTERGENIC | None |