Detailed information of SNP:
|
SNP ID:
sf0709639180(Gbrowse)
Chromosome: chr07 Position: 9639180 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1361 | 94.93% | 5.07% |
| All Indica | 742 | 90.97% | 9.03% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 349 | 89.40% | 10.60% |
| Indica II | 197 | 92.39% | 7.61% |
| Indica Intermediate | 196 | 92.35% | 7.65% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709639180 | T->C | INTERGENIC | None |