Detailed information of SNP:
|
SNP ID:
sf0709654048(Gbrowse)
Chromosome: chr07 Position: 9654048 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1294 | 60.20% | 39.80% |
| All Indica | 685 | 27.59% | 72.41% |
| All Japonica | 493 | 99.59% | 0.41% |
| Aus | 65 | 92.31% | 7.69% |
| Indica I | 313 | 22.04% | 77.96% |
| Indica II | 195 | 26.67% | 73.33% |
| Indica Intermediate | 177 | 38.42% | 61.58% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 67.57% | 32.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709654048 | G->A | INTERGENIC | None |