Detailed information of SNP:
|
SNP ID:
sf0709663651(Gbrowse)
Chromosome: chr07 Position: 9663651 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 94.64% | 5.36% |
| All Indica | 781 | 92.70% | 7.30% |
| All Japonica | 495 | 97.98% | 2.02% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 370 | 91.35% | 8.65% |
| Indica II | 206 | 91.75% | 8.25% |
| Indica Intermediate | 205 | 96.10% | 3.90% |
| Temperate Japonica | 333 | 98.20% | 1.80% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709663651 | A->G | LOC_Os07g16490(LOC_Os07g16490.1) | INTRON |