Detailed information of SNP:
|
SNP ID:
sf0709669806(Gbrowse)
Chromosome: chr07 Position: 9669806 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1376 | 50.65% | 49.35% |
| All Indica | 770 | 79.22% | 20.78% |
| All Japonica | 483 | 10.14% | 89.86% |
| Aus | 67 | 22.39% | 77.61% |
| Indica I | 353 | 74.79% | 25.21% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 204 | 69.61% | 30.39% |
| Temperate Japonica | 323 | 12.07% | 87.93% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709669806 | C->T | INTERGENIC | None |