Detailed information of SNP:
|
SNP ID:
sf0709671533(Gbrowse)
Chromosome: chr07 Position: 9671533 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1378 | 62.05% | 37.95% |
| All Indica | 784 | 88.65% | 11.35% |
| All Japonica | 472 | 23.94% | 76.06% |
| Aus | 67 | 25.37% | 74.63% |
| Indica I | 363 | 90.91% | 9.09% |
| Indica II | 212 | 97.64% | 2.36% |
| Indica Intermediate | 209 | 75.60% | 24.40% |
| Temperate Japonica | 313 | 30.99% | 69.01% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 65 | 18.46% | 81.54% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709671533 | A->C | INTERGENIC | None |