Detailed information of SNP:
|
SNP ID:
sf0709671728(Gbrowse)
Chromosome: chr07 Position: 9671728 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1402 | 61.77% | 38.23% |
| All Indica | 791 | 87.86% | 12.14% |
| All Japonica | 489 | 25.36% | 74.64% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 368 | 89.40% | 10.60% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 327 | 32.72% | 67.28% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709671728 | A->G | INTERGENIC | None |