Detailed information of SNP:
|
SNP ID:
sf0709671768(Gbrowse)
Chromosome: chr07 Position: 9671768 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 62.07% | 37.93% |
| All Indica | 792 | 87.75% | 12.25% |
| All Japonica | 486 | 25.93% | 74.07% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 369 | 89.16% | 10.84% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 76.19% | 23.81% |
| Temperate Japonica | 324 | 33.02% | 66.98% |
| Tropical Japonica | 94 | 5.32% | 94.68% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709671768 | A->G | INTERGENIC | None |