Detailed information of SNP:
|
SNP ID:
sf0709672633(Gbrowse)
Chromosome: chr07 Position: 9672633 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 60.37% | 39.63% |
| All Indica | 777 | 86.74% | 13.26% |
| All Japonica | 494 | 24.70% | 75.30% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 358 | 87.99% | 12.01% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 206 | 73.79% | 26.21% |
| Temperate Japonica | 333 | 31.83% | 68.17% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709672633 | C->T | LOC_Os07g16500(LOC_Os07g16500.1) | INTRON |