Detailed information of SNP:
|
SNP ID:
sf0709673730(Gbrowse)
Chromosome: chr07 Position: 9673730 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1403 | 60.73% | 39.27% |
| All Indica | 786 | 86.01% | 13.99% |
| All Japonica | 495 | 26.67% | 73.33% |
| Aus | 67 | 26.87% | 73.13% |
| Indica I | 365 | 87.40% | 12.60% |
| Indica II | 212 | 94.34% | 5.66% |
| Indica Intermediate | 209 | 75.12% | 24.88% |
| Temperate Japonica | 334 | 34.13% | 65.87% |
| Tropical Japonica | 93 | 5.38% | 94.62% |
| Japonica Intermediate | 68 | 19.12% | 80.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709673730 | C->T | LOC_Os07g16500(LOC_Os07g16500.1) | INTRON |