Detailed information of SNP:
|
SNP ID:
sf0709674345(Gbrowse)
Chromosome: chr07 Position: 9674345 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1393 | 60.66% | 39.34% |
| All Indica | 780 | 87.05% | 12.95% |
| All Japonica | 491 | 24.24% | 75.76% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 361 | 89.47% | 10.53% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 207 | 74.88% | 25.12% |
| Temperate Japonica | 330 | 31.21% | 68.79% |
| Tropical Japonica | 94 | 4.26% | 95.74% |
| Japonica Intermediate | 67 | 17.91% | 82.09% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709674345 | T->C | LOC_Os07g16500(LOC_Os07g16500.1) | Synonymous |