Detailed information of SNP:
|
SNP ID:
sf0709677556(Gbrowse)
Chromosome: chr07 Position: 9677556 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1353 | 53.88% | 46.12% |
| All Indica | 764 | 84.95% | 15.05% |
| All Japonica | 475 | 10.74% | 89.26% |
| Aus | 62 | 16.13% | 83.87% |
| Indica I | 352 | 83.81% | 16.19% |
| Indica II | 210 | 98.10% | 1.90% |
| Indica Intermediate | 202 | 73.27% | 26.73% |
| Temperate Japonica | 316 | 13.29% | 86.71% |
| Tropical Japonica | 93 | 2.15% | 97.85% |
| Japonica Intermediate | 66 | 10.61% | 89.39% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 39 | 48.72% | 51.28% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709677556 | C->T | INTERGENIC | None |