Detailed information of SNP:
|
SNP ID:
sf0709678225(Gbrowse)
Chromosome: chr07 Position: 9678225 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1367 | 54.28% | 45.72% |
| All Indica | 777 | 85.33% | 14.67% |
| All Japonica | 473 | 10.57% | 89.43% |
| Aus | 65 | 13.85% | 86.15% |
| Indica I | 360 | 84.44% | 15.56% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 205 | 73.17% | 26.83% |
| Temperate Japonica | 314 | 13.06% | 86.94% |
| Tropical Japonica | 92 | 2.17% | 97.83% |
| Japonica Intermediate | 67 | 10.45% | 89.55% |
| Group VI/Aromatic | 13 | 0.00% | 100.00% |
| Intermediate | 39 | 51.28% | 48.72% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709678225 | G->A | INTERGENIC | None |