Detailed information of SNP:
|
SNP ID:
sf0709748040(Gbrowse)
Chromosome: chr07 Position: 9748040 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 51.90% | 48.10% |
| All Indica | 761 | 85.15% | 14.85% |
| All Japonica | 486 | 6.38% | 93.62% |
| Aus | 65 | 15.38% | 84.62% |
| Indica I | 352 | 84.09% | 15.91% |
| Indica II | 211 | 96.68% | 3.32% |
| Indica Intermediate | 198 | 74.75% | 25.25% |
| Temperate Japonica | 325 | 7.38% | 92.62% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709748040 | T->A | INTERGENIC | None |