Detailed information of SNP:
|
SNP ID:
sf0709748080(Gbrowse)
Chromosome: chr07 Position: 9748080 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 74.52% | 25.48% |
| All Indica | 794 | 95.97% | 4.03% |
| All Japonica | 497 | 46.48% | 53.52% |
| Aus | 67 | 34.33% | 65.67% |
| Indica I | 370 | 94.32% | 5.68% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 55.22% | 44.78% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 54.41% | 45.59% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709748080 | C->G | INTERGENIC | None |