Detailed information of SNP:
|
SNP ID:
sf0709772826(Gbrowse)
Chromosome: chr07 Position: 9772826 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1392 | 97.77% | 2.23% |
| All Indica | 778 | 98.59% | 1.41% |
| All Japonica | 495 | 97.78% | 2.22% |
| Aus | 64 | 87.50% | 12.50% |
| Indica I | 369 | 98.92% | 1.08% |
| Indica II | 201 | 97.51% | 2.49% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 334 | 97.01% | 2.99% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709772826 | T->C | LOC_Os07g16650(LOC_Os07g16650.1) | Non-Synonymous SNP |