Detailed information of SNP:
|
SNP ID:
sf0709780863(Gbrowse)
Chromosome: chr07 Position: 9780863 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 93.14% | 6.86% |
| All Indica | 795 | 99.50% | 0.50% |
| All Japonica | 495 | 81.82% | 18.18% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 98.56% | 1.44% |
| Temperate Japonica | 333 | 74.47% | 25.53% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 92.65% | 7.35% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709780863 | G->A | LOC_Os07g16660(LOC_Os07g16660.1) | INTRON |