Detailed information of SNP:
|
SNP ID:
sf0709788126(Gbrowse)
Chromosome: chr07 Position: 9788126 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1387 | 75.99% | 24.01% |
| All Indica | 781 | 93.47% | 6.53% |
| All Japonica | 486 | 51.03% | 48.97% |
| Aus | 64 | 53.12% | 46.88% |
| Indica I | 368 | 92.93% | 7.07% |
| Indica II | 211 | 95.26% | 4.74% |
| Indica Intermediate | 202 | 92.57% | 7.43% |
| Temperate Japonica | 326 | 59.20% | 40.80% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 66 | 63.64% | 36.36% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709788126 | C->T | INTERGENIC | None |