Detailed information of SNP:
|
SNP ID:
sf0709805590(Gbrowse)
Chromosome: chr07 Position: 9805590 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1346 | 96.66% | 3.34% |
| All Indica | 741 | 95.68% | 4.32% |
| All Japonica | 484 | 97.52% | 2.48% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 351 | 96.58% | 3.42% |
| Indica II | 189 | 92.59% | 7.41% |
| Indica Intermediate | 201 | 97.01% | 2.99% |
| Temperate Japonica | 325 | 96.62% | 3.38% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709805590 | T->C | INTERGENIC | None |