Detailed information of SNP:



SNP ID: sf0709805590(Gbrowse)

Chromosome: chr07

Position: 9805590
Major allele: T

Minor allele: C

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of C(minor allele)
All1346 96.66% 3.34%
All Indica741 95.68% 4.32%
All Japonica484 97.52% 2.48%
Aus67 100.00% 0.00%
Indica I351 96.58% 3.42%
Indica II189 92.59% 7.41%
Indica Intermediate201 97.01% 2.99%
Temperate Japonica325 96.62% 3.38%
Tropical Japonica93 98.92% 1.08%
Japonica Intermediate66 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 97.50% 2.50%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0709805590 T->C INTERGENIC None