Detailed information of SNP:
|
SNP ID:
sf0709836243(Gbrowse)
Chromosome: chr07 Position: 9836243 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 94.63% | 5.37% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 492 | 86.99% | 13.01% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 334 | 85.93% | 14.07% |
| Tropical Japonica | 93 | 97.85% | 2.15% |
| Japonica Intermediate | 65 | 76.92% | 23.08% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709836243 | T->A | INTERGENIC | None |