Detailed information of SNP:
|
SNP ID:
sf0709836405(Gbrowse)
Chromosome: chr07 Position: 9836405 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 95.17% | 4.83% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 487 | 88.91% | 11.09% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 329 | 89.67% | 10.33% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 64 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709836405 | G->A | LOC_Os07g16770(LOC_Os07g16770.1) | Non-Synonymous SNP |