Detailed information of SNP:
|
SNP ID:
sf0709858073(Gbrowse)
Chromosome: chr07 Position: 9858073 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 53.68% | 46.32% |
| All Indica | 799 | 24.41% | 75.59% |
| All Japonica | 492 | 96.75% | 3.25% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 35.47% | 64.53% |
| Indica II | 213 | 5.63% | 94.37% |
| Indica Intermediate | 211 | 23.70% | 76.30% |
| Temperate Japonica | 332 | 97.29% | 2.71% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 66 | 92.42% | 7.58% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709858073 | G->A | LOC_Os07g16800(LOC_Os07g16800.1) | Non-Synonymous SNP |