Detailed information of SNP:
|
SNP ID:
sf0709879594(Gbrowse)
Chromosome: chr07 Position: 9879594 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1304 | 97.70% | 2.30% |
| All Indica | 689 | 96.23% | 3.77% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 305 | 96.07% | 3.93% |
| Indica II | 200 | 97.50% | 2.50% |
| Indica Intermediate | 184 | 95.11% | 4.89% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709879594 | G->C | INTERGENIC | None |