Detailed information of SNP:
|
SNP ID:
sf0709920520(Gbrowse)
Chromosome: chr07 Position: 9920520 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 96.10% | 3.90% |
| All Indica | 769 | 93.37% | 6.63% |
| All Japonica | 492 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 361 | 94.74% | 5.26% |
| Indica II | 202 | 91.09% | 8.91% |
| Indica Intermediate | 206 | 93.20% | 6.80% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 66 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709920520 | G->A | LOC_Os07g16870(LOC_Os07g16870.1) | INTRON |