Detailed information of SNP:
|
SNP ID:
sf0709921570(Gbrowse)
Chromosome: chr07 Position: 9921570 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 97.39% | 2.61% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 334 | 95.21% | 4.79% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709921570 | T->C | INTERGENIC | None |