Detailed information of SNP:
|
SNP ID:
sf0709954557(Gbrowse)
Chromosome: chr07 Position: 9954557 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 66.12% | 33.88% |
| All Indica | 796 | 93.59% | 6.41% |
| All Japonica | 495 | 32.12% | 67.88% |
| Aus | 67 | 7.46% | 92.54% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 333 | 42.34% | 57.66% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709954557 | T->G | INTERGENIC | None |