Detailed information of SNP:
|
SNP ID:
sf0709962235(Gbrowse)
Chromosome: chr07 Position: 9962235 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1365 | 92.60% | 7.40% |
| All Indica | 757 | 99.21% | 0.79% |
| All Japonica | 492 | 84.15% | 15.85% |
| Aus | 62 | 88.71% | 11.29% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 169 | 97.63% | 2.37% |
| Temperate Japonica | 333 | 84.68% | 15.32% |
| Tropical Japonica | 92 | 94.57% | 5.43% |
| Japonica Intermediate | 67 | 67.16% | 32.84% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709962235 | C->T | INTERGENIC | None |