Detailed information of SNP:
|
SNP ID:
sf0709980448(Gbrowse)
Chromosome: chr07 Position: 9980448 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 88.85% | 11.15% |
| All Indica | 797 | 94.10% | 5.90% |
| All Japonica | 497 | 83.10% | 16.90% |
| Aus | 67 | 79.10% | 20.90% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 78.95% | 21.05% |
| Temperate Japonica | 335 | 84.18% | 15.82% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709980448 | T->C | INTERGENIC | None |