Detailed information of SNP:
|
SNP ID:
sf0709982838(Gbrowse)
Chromosome: chr07 Position: 9982838 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 97.14% | 2.86% |
| All Indica | 798 | 99.87% | 0.13% |
| All Japonica | 484 | 99.59% | 0.41% |
| Aus | 63 | 41.27% | 58.73% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 82 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709982838 | G->A | LOC_Os07g16970(LOC_Os07g16970.2) | UTR_3_PRIME |
| sf0709982838 | G->A | LOC_Os07g16970(LOC_Os07g16970.1) | Non-Synonymous SNP |