Detailed information of SNP:
|
SNP ID:
sf0709983427(Gbrowse)
Chromosome: chr07 Position: 9983427 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 95.34% | 4.66% |
| All Indica | 799 | 93.87% | 6.13% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 65 | 90.77% | 9.23% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 78.20% | 21.80% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709983427 | A->G | LOC_Os07g16970(LOC_Os07g16970.2) | INTRON |
| sf0709983427 | A->G | LOC_Os07g16970(LOC_Os07g16970.1) | INTRON |