Detailed information of SNP:
|
SNP ID:
sf0709983457(Gbrowse)
Chromosome: chr07 Position: 9983457 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 66.62% | 33.38% |
| All Indica | 798 | 92.86% | 7.14% |
| All Japonica | 496 | 33.47% | 66.53% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 76.78% | 23.22% |
| Temperate Japonica | 334 | 44.01% | 55.99% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 23.53% | 76.47% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709983457 | C->T | LOC_Os07g16970(LOC_Os07g16970.2) | INTRON |
| sf0709983457 | C->T | LOC_Os07g16970(LOC_Os07g16970.1) | INTRON |