Detailed information of SNP:
|
SNP ID:
sf0709983499(Gbrowse)
Chromosome: chr07 Position: 9983499 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 66.45% | 33.55% |
| All Indica | 797 | 93.22% | 6.78% |
| All Japonica | 497 | 33.20% | 66.80% |
| Aus | 67 | 14.93% | 85.07% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 210 | 78.10% | 21.90% |
| Temperate Japonica | 335 | 43.88% | 56.12% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709983499 | T->C | LOC_Os07g16970(LOC_Os07g16970.2) | INTRON |
| sf0709983499 | T->C | LOC_Os07g16970(LOC_Os07g16970.1) | INTRON |