Detailed information of SNP:
|
SNP ID:
sf0709986995(Gbrowse)
Chromosome: chr07 Position: 9986995 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 76.11% | 23.89% |
| All Indica | 799 | 78.10% | 21.90% |
| All Japonica | 497 | 67.81% | 32.19% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 65.87% | 34.13% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 81.99% | 18.01% |
| Temperate Japonica | 335 | 57.31% | 42.69% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0709986995 | A->G | LOC_Os07g16970(LOC_Os07g16970.2) | INTRON |
| sf0709986995 | A->G | LOC_Os07g16970(LOC_Os07g16970.1) | INTRON |