Detailed information of SNP:
|
SNP ID:
sf0710046555(Gbrowse)
Chromosome: chr07 Position: 10046555 |
Major allele:
G
Minor allele: C Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1390 | 90.79% | 9.21% |
| All Indica | 772 | 83.68% | 16.32% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 360 | 77.22% | 22.78% |
| Indica II | 209 | 89.47% | 10.53% |
| Indica Intermediate | 203 | 89.16% | 10.84% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710046555 | G->C | LOC_Os07g17080(LOC_Os07g17080.1) | Non-Synonymous SNP |