Detailed information of SNP:
|
SNP ID:
sf0710079824(Gbrowse)
Chromosome: chr07 Position: 10079824 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 92.69% | 7.31% |
| All Indica | 796 | 96.86% | 3.14% |
| All Japonica | 491 | 85.13% | 14.87% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 87.98% | 12.02% |
| Temperate Japonica | 333 | 85.89% | 14.11% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 65 | 64.62% | 35.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710079824 | G->A | INTERGENIC | None |