Detailed information of SNP:
|
SNP ID:
sf0710139241(Gbrowse)
Chromosome: chr07 Position: 10139241 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 97.71% | 2.29% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 474 | 94.51% | 5.49% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 99.07% | 0.93% |
| Tropical Japonica | 93 | 96.77% | 3.23% |
| Japonica Intermediate | 59 | 66.10% | 33.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710139241 | T->A | INTERGENIC | None |