Detailed information of SNP:
|
SNP ID:
sf0710179886(Gbrowse)
Chromosome: chr07 Position: 10179886 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 60.37% | 39.63% |
| All Indica | 799 | 94.62% | 5.38% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 8.66% | 91.34% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710179886 | A->G | LOC_Os07g17260(LOC_Os07g17260.1) | INTRON |
| sf0710179886 | A->G | LOC_Os07g17260(LOC_Os07g17260.2) | INTRON |