Detailed information of SNP:
|
SNP ID:
sf0710230866(Gbrowse)
Chromosome: chr07 Position: 10230866 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 72.16% | 27.84% |
| All Indica | 798 | 95.36% | 4.64% |
| All Japonica | 495 | 31.52% | 68.48% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 83.41% | 16.59% |
| Temperate Japonica | 335 | 17.91% | 82.09% |
| Tropical Japonica | 92 | 61.96% | 38.04% |
| Japonica Intermediate | 68 | 57.35% | 42.65% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710230866 | G->A | LOC_Os07g17330(LOC_Os07g17330.1) | UTR_5_PRIME |