Detailed information of SNP:
|
SNP ID:
sf0710250898(Gbrowse)
Chromosome: chr07 Position: 10250898 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1271 | 96.70% | 3.30% |
| All Indica | 657 | 93.61% | 6.39% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 303 | 91.09% | 8.91% |
| Indica II | 169 | 99.41% | 0.59% |
| Indica Intermediate | 185 | 92.43% | 7.57% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710250898 | C->T | LOC_Os07g17360(LOC_Os07g17360.1) | Non-Synonymous SNP |
| sf0710250898 | C->T | LOC_Os07g17360(LOC_Os07g17360.2) | Non-Synonymous SNP |