Detailed information of SNP:
|
SNP ID:
sf0710252997(Gbrowse)
Chromosome: chr07 Position: 10252997 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 64.75% | 35.25% |
| All Indica | 780 | 98.21% | 1.79% |
| All Japonica | 453 | 7.95% | 92.05% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 194 | 93.81% | 6.19% |
| Temperate Japonica | 304 | 5.59% | 94.41% |
| Tropical Japonica | 89 | 15.73% | 84.27% |
| Japonica Intermediate | 60 | 8.33% | 91.67% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710252997 | A->C | INTERGENIC | None |