Detailed information of SNP:
|
SNP ID:
sf0710256931(Gbrowse)
Chromosome: chr07 Position: 10256931 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1401 | 89.86% | 10.14% |
| All Indica | 799 | 99.75% | 0.25% |
| All Japonica | 482 | 78.63% | 21.37% |
| Aus | 65 | 47.69% | 52.31% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 329 | 98.18% | 1.82% |
| Tropical Japonica | 86 | 31.40% | 68.60% |
| Japonica Intermediate | 67 | 43.28% | 56.72% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710256931 | C->T | LOC_Os07g17370(LOC_Os07g17370.1) | INTRON |