Detailed information of SNP:



SNP ID: sf0710285022(Gbrowse)

Chromosome: chr07

Position: 10285022
Major allele: C

Minor allele: A

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of A(minor allele)
All1419 98.59% 1.41%
All Indica799 100.00% 0.00%
All Japonica497 95.98% 4.02%
Aus67 100.00% 0.00%
Indica I375 100.00% 0.00%
Indica II213 100.00% 0.00%
Indica Intermediate211 100.00% 0.00%
Temperate Japonica335 94.03% 5.97%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 100.00% 0.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0710285022 C->A LOC_Os07g17420(LOC_Os07g17420.1) INTRON