Detailed information of SNP:
|
SNP ID:
sf0710292178(Gbrowse)
Chromosome: chr07 Position: 10292178 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1308 | 97.32% | 2.68% |
| All Indica | 697 | 95.27% | 4.73% |
| All Japonica | 493 | 99.80% | 0.20% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 328 | 98.78% | 1.22% |
| Indica II | 176 | 91.48% | 8.52% |
| Indica Intermediate | 193 | 92.75% | 7.25% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 97.37% | 2.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710292178 | T->C | INTERGENIC | None |