Detailed information of SNP:
|
SNP ID:
sf0710325249(Gbrowse)
Chromosome: chr07 Position: 10325249 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1271 | 85.29% | 14.71% |
| All Indica | 664 | 73.49% | 26.51% |
| All Japonica | 493 | 100.00% | 0.00% |
| Aus | 61 | 91.80% | 8.20% |
| Indica I | 315 | 82.22% | 17.78% |
| Indica II | 167 | 52.10% | 47.90% |
| Indica Intermediate | 182 | 78.02% | 21.98% |
| Temperate Japonica | 332 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 84.62% | 15.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710325249 | C->T | INTERGENIC | None |