Detailed information of SNP:
|
SNP ID:
sf0710330335(Gbrowse)
Chromosome: chr07 Position: 10330335 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 85.61% | 14.39% |
| All Indica | 798 | 87.84% | 12.16% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 213 | 94.37% | 5.63% |
| Indica Intermediate | 211 | 85.78% | 14.22% |
| Temperate Japonica | 335 | 77.01% | 22.99% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710330335 | T->C | INTERGENIC | None |