Detailed information of SNP:
|
SNP ID:
sf0710330871(Gbrowse)
Chromosome: chr07 Position: 10330871 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1325 | 82.34% | 17.66% |
| All Indica | 713 | 85.55% | 14.45% |
| All Japonica | 496 | 79.23% | 20.77% |
| Aus | 63 | 80.95% | 19.05% |
| Indica I | 355 | 88.17% | 11.83% |
| Indica II | 162 | 93.83% | 6.17% |
| Indica Intermediate | 196 | 73.98% | 26.02% |
| Temperate Japonica | 335 | 70.15% | 29.85% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0710330871 | T->C | INTERGENIC | None |